Given a gene, what diseases are associated with it.
bioentity_diseases_assoc_w_gene(gene, rows = 100)
| gene | A valid monarch initiative gene id. |
|---|---|
| rows | Number of rows of results to fetch. |
A list of (tibble of disease information, monarch_api S3 class).
https://api.monarchinitiative.org/api/bioentity/gene/NCBIGene
gene <- "NCBIGene:8314" bioentity_diseases_assoc_w_gene(gene)#> $diseases #> # A tibble: 25 x 10 #> subject.taxon subject.id subject relation object object.id object.taxon #> * <chr> <chr> <chr> <chr> <chr> <chr> <lgl> #> 1 Homo sapiens HGNC:950 BAP1 is marke… lipoma MONDO:00… NA #> 2 Homo sapiens HGNC:950 BAP1 is marke… leukemia … MONDO:00… NA #> 3 Homo sapiens HGNC:950 BAP1 is marke… bone canc… MONDO:00… NA #> 4 Homo sapiens HGNC:950 BAP1 is marke… epithelio… MONDO:00… NA #> 5 Homo sapiens HGNC:950 BAP1 is marke… testicula… MONDO:00… NA #> 6 Homo sapiens HGNC:950 BAP1 is marke… meningiom… MONDO:00… NA #> 7 Homo sapiens HGNC:950 BAP1 has phen… uveal mel… MONDO:00… NA #> 8 Homo sapiens HGNC:950 BAP1 is marke… malignant… MONDO:00… NA #> 9 Homo sapiens HGNC:950 BAP1 is marke… neuroendo… MONDO:00… NA #> 10 Homo sapiens HGNC:950 BAP1 is marke… lung aden… MONDO:00… NA #> # ... with 15 more rows, and 3 more variables: evidence <fct>, #> # publications <fct>, provided_by <fct> #> #> $response #> <monarch https://api.monarchinitiative.org/api/bioentity/gene/NCBIGene%3A8314/diseases/?rows=100&fetch_objects=true&format=json> #> <Showing parsed R objects from json response. 2 level(s) deep> #> List of 7 #> $ compact_associations: NULL #> $ associations :'data.frame': 25 obs. of 14 variables: #> ..$ provided_by :List of 25 #> ..$ relation :'data.frame': 25 obs. of 2 variables: #> ..$ object_extensions : logi [1:25] NA NA NA NA NA NA ... #> ..$ publications :List of 25 #> ..$ object :'data.frame': 25 obs. of 3 variables: #> ..$ negated : logi [1:25] FALSE FALSE FALSE FALSE FALSE FALSE ... #> ..$ slim : logi [1:25] NA NA NA NA NA NA ... #> ..$ subject_extensions: logi [1:25] NA NA NA NA NA NA ... #> ..$ type : logi [1:25] NA NA NA NA NA NA ... #> ..$ qualifiers : logi [1:25] NA NA NA NA NA NA ... #> ..$ evidence_graph :'data.frame': 25 obs. of 2 variables: #> ..$ evidence_types : logi [1:25] NA NA NA NA NA NA ... #> ..$ id : chr [1:25] "fe8e4862-c2ee-4268-aacc-5c1b3fdc7f87" "b86a9452-7dd4-4bbc-903e-58deb5342121" "83831e6d-e228-45f9-bf9b-048eb8be4e9d" "b8162a96-b43d-44fe-b8d8-d213cf2d9b9b" ... #> ..$ subject :'data.frame': 25 obs. of 3 variables: #> $ objects : chr [1:25] "MONDO:0000448" "MONDO:0002120" "MONDO:0002129" "MONDO:0002367" ... #> $ highlighting : NULL #> $ numFound : NULL #> $ facet_counts :List of 2 #> ..$ subject_taxon_label:List of 1 #> ..$ object_closure :List of 25 #> $ docs : NULL #>