Gets gene info, like catgories and labels for a gene.

Source: R/monarchr.R

The monarch_api class is included in return mainly for debugging the REST requests.

bioentity_gene_info(gene, rows = 100)

Arguments

gene	A valid monarch initiative gene id.
rows	Number of rows of results to fetch.

Value

A list of (list of gene information, monarch_api S3 class).

Details

https://api.monarchinitiative.org/api/bioentity/gene/NCBIGene https://api.monarchinitiative.org/api/bioentity/gene/HGNC

Examples

gene <-"NCBIGene:8314"
bioentity_gene_info(gene)
#> $gene_info
#> $gene_info$taxon
#> $gene_info$taxon$label
#> [1] "Homo sapiens"
#> 
#> $gene_info$taxon$id
#> [1] "NCBITaxon:9606"
#> 
#> 
#> $gene_info$xrefs
#> NULL
#> 
#> $gene_info$synonyms
#> NULL
#> 
#> $gene_info$types
#> NULL
#> 
#> $gene_info$replaced_by
#> NULL
#> 
#> $gene_info$description
#> NULL
#> 
#> $gene_info$categories
#> [1] "gene"             "sequence feature"
#> 
#> $gene_info$consider
#> NULL
#> 
#> $gene_info$deprecated
#> NULL
#> 
#> $gene_info$label
#> [1] "BAP1"
#> 
#> $gene_info$id
#> [1] "HGNC:950"
#> 
#> 
#> $response
#> <monarch https://api.monarchinitiative.org/api/bioentity/gene/NCBIGene%3A8314?rows=100&fetch_objects=true&format=json>
#> <Showing parsed R objects from json response. 2 level(s) deep>
#> List of 11
#>  $ taxon      :List of 2
#>   ..$ label: chr "Homo sapiens"
#>   ..$ id   : chr "NCBITaxon:9606"
#>  $ xrefs      : NULL
#>  $ synonyms   : NULL
#>  $ types      : NULL
#>  $ replaced_by: NULL
#>  $ description: NULL
#>  $ categories : chr [1:2] "gene" "sequence feature"
#>  $ consider   : NULL
#>  $ deprecated : NULL
#>  $ label      : chr "BAP1"
#>  $ id         : chr "HGNC:950"
#>