mimics https://api.monarchinitiative.org/api/bioentity/disease/MONDO
bioentity_genes_assoc_w_disease(disease, rows = 100, start = 0, fetch_objects = FALSE)
| disease | An id for a disease, like a MONDO ID. |
|---|---|
| rows | Number of rows of results to fetch. |
| start | The starting row of the results to fetch. |
| fetch_objects | Whether or not to fetch objects at the top level of the json response. |
A list of (a list of information, monarch_api S3 class).
disease <- "MONDO:0006486" # uveal melanoma bioentity_genes_assoc_w_disease(disease)#> $genes #> # A tibble: 11 x 10 #> subject.taxon subject.id subject relation object object.id object.taxon #> * <chr> <chr> <chr> <chr> <chr> <chr> <lgl> #> 1 Homo sapiens HGNC:18274 CYSLTR2 is marker … uveal m… MONDO:00… NA #> 2 Homo sapiens HGNC:24308 CLPTM1L contribute… uveal m… MONDO:00… NA #> 3 Homo sapiens HGNC:950 BAP1 has phenot… uveal m… MONDO:00… NA #> 4 Homo sapiens HGNC:3250 EIF1AX is marker … uveal m… MONDO:00… NA #> 5 Homo sapiens HGNC:4390 GNAQ has phenot… uveal m… MONDO:00… NA #> 6 Homo sapiens HGNC:9059 PLCB4 is marker … uveal m… MONDO:00… NA #> 7 Homo sapiens HGNC:4390 GNAQ likely_pat… suscept… MONDO:00… NA #> 8 Homo sapiens HGNC:4379 GNA11 likely_pat… suscept… MONDO:00… NA #> 9 Homo sapiens HGNC:8101 OCA2 contribute… uveal m… MONDO:00… NA #> 10 Homo sapiens HGNC:4379 GNA11 is marker … uveal m… MONDO:00… NA #> 11 Homo sapiens HGNC:10768 SF3B1 is marker … uveal m… MONDO:00… NA #> # ... with 3 more variables: evidence <fct>, publications <fct>, #> # provided_by <fct> #> #> $response #> <monarch https://api.monarchinitiative.org/api/bioentity/disease/MONDO%3A0006486/genes/?rows=100&fetch_objects=false&start=0&format=json> #> <Showing parsed R objects from json response. 2 level(s) deep> #> List of 7 #> $ compact_associations: NULL #> $ associations :'data.frame': 11 obs. of 14 variables: #> ..$ provided_by :List of 11 #> ..$ relation :'data.frame': 11 obs. of 2 variables: #> ..$ object_extensions : logi [1:11] NA NA NA NA NA NA ... #> ..$ publications :List of 11 #> ..$ object :'data.frame': 11 obs. of 3 variables: #> ..$ negated : logi [1:11] FALSE FALSE FALSE FALSE FALSE FALSE ... #> ..$ slim : logi [1:11] NA NA NA NA NA NA ... #> ..$ subject_extensions: logi [1:11] NA NA NA NA NA NA ... #> ..$ type : logi [1:11] NA NA NA NA NA NA ... #> ..$ qualifiers : logi [1:11] NA NA NA NA NA NA ... #> ..$ evidence_graph :'data.frame': 11 obs. of 2 variables: #> ..$ evidence_types : logi [1:11] NA NA NA NA NA NA ... #> ..$ id : chr [1:11] "7b03c05a-6e78-4bad-96a3-aa86ff2b6d44" "8985289d-08b8-426b-b5b1-d908b751c6bb" "19ceeb01-f54c-4cc6-8317-a4686b355eac" "3bac6228-3de7-4502-8dff-21dcc45b2ef3" ... #> ..$ subject :'data.frame': 11 obs. of 3 variables: #> $ objects : chr [1:9] "HGNC:10768" "HGNC:18274" "HGNC:24308" "HGNC:3250" ... #> $ highlighting : NULL #> $ numFound : NULL #> $ facet_counts :List of 2 #> ..$ subject_taxon_label:List of 1 #> ..$ object_closure :List of 25 #> $ docs : NULL #>