Gets interactions associated with a gene.

Source: R/monarchr.R

Given a gene, what variants are associated with it.

bioentity_interactions_assoc_w_gene(gene, rows = 100)

Arguments

gene	A valid monarch initiative gene id.
rows	Number of rows of results to fetch.

Value

A list of (tibble of interactions information, monarch_api S3 class).

Details

https://api.monarchinitiative.org/api/bioentity/gene/HGNC

Examples

gene <- "NCBIGene:8314"
bioentity_interactions_assoc_w_gene(gene)
#> $interactions
#> # A tibble: 100 x 10
#>    subject.taxon subject.id subject relation    object   object.id object.taxon
#>  * <chr>         <chr>      <chr>   <chr>       <chr>    <chr>     <chr>       
#>  1 Homo sapiens  HGNC:950   BAP1    interacts … IPO4     HGNC:194… Homo sapiens
#>  2 Homo sapiens  HGNC:950   BAP1    interacts … USP28    HGNC:126… Homo sapiens
#>  3 Homo sapiens  HGNC:950   BAP1    interacts … MAP3K1   HGNC:6848 Homo sapiens
#>  4 Homo sapiens  HGNC:950   BAP1    interacts … XRCC3    HGNC:128… Homo sapiens
#>  5 Homo sapiens  HGNC:950   BAP1    interacts … PSMB2    HGNC:9539 Homo sapiens
#>  6 Homo sapiens  HGNC:950   BAP1    interacts … AHCYL2   HGNC:222… Homo sapiens
#>  7 Homo sapiens  HGNC:950   BAP1    interacts … BMI1     HGNC:1066 Homo sapiens
#>  8 Homo sapiens  HGNC:950   BAP1    interacts … TSNAX    HGNC:123… Homo sapiens
#>  9 Homo sapiens  HGNC:950   BAP1    interacts … PHC1     HGNC:3182 Homo sapiens
#> 10 Homo sapiens  HGNC:950   BAP1    interacts … HIST2H2… HGNC:4736 Homo sapiens
#> # ... with 90 more rows, and 3 more variables: evidence <fct>,
#> #   publications <fct>, provided_by <fct>
#> 
#> $response
#> <monarch https://api.monarchinitiative.org/api/bioentity/gene/NCBIGene%3A8314/interactions/?rows=100&fetch_objects=true&format=json>
#> <Showing parsed R objects from json response. 2 level(s) deep>
#> List of 7
#>  $ compact_associations: NULL
#>  $ associations        :'data.frame':	100 obs. of  14 variables:
#>   ..$ provided_by       :List of 100
#>   ..$ relation          :'data.frame':	100 obs. of  2 variables:
#>   ..$ object_extensions : logi [1:100] NA NA NA NA NA NA ...
#>   ..$ publications      :List of 100
#>   ..$ object            :'data.frame':	100 obs. of  3 variables:
#>   ..$ negated           : logi [1:100] FALSE FALSE FALSE FALSE FALSE FALSE ...
#>   ..$ slim              : logi [1:100] NA NA NA NA NA NA ...
#>   ..$ subject_extensions: logi [1:100] NA NA NA NA NA NA ...
#>   ..$ type              : logi [1:100] NA NA NA NA NA NA ...
#>   ..$ qualifiers        : logi [1:100] NA NA NA NA NA NA ...
#>   ..$ evidence_graph    :'data.frame':	100 obs. of  2 variables:
#>   ..$ evidence_types    : logi [1:100] NA NA NA NA NA NA ...
#>   ..$ id                : chr [1:100] "275ab5b0-c1e5-4ff5-87f7-874feed8bae8" "2e655269-b09d-4c5f-afd3-a6b3e33d1ddd" "f17fc1eb-ac61-41ca-9a97-3047e10cb4dd" "3e2639f2-7f5c-4bed-ae6b-cea230ee1b64" ...
#>   ..$ subject           :'data.frame':	100 obs. of  3 variables:
#>  $ objects             : chr [1:148] "ENSEMBL:ENSG00000261884" "HGNC:10018" "HGNC:10061" "HGNC:10066" ...
#>  $ highlighting        : NULL
#>  $ numFound            : NULL
#>  $ facet_counts        :List of 2
#>   ..$ subject_taxon_label:List of 1
#>   ..$ object_closure     :List of 25
#>  $ docs                : NULL
#>