https://api.monarchinitiative.org/api/search/entity/uveal
biolink_search(phrase_or_id, rows = 20)
| phrase_or_id | Something for which we are looking for more information, or to find useful entities. |
|---|---|
| rows | Number of rows of results to fetch. |
A list of (the search results, and monarch_api S3 class.)
Note, as opposed to the bioentity_ functions, the biolink_search results are not standardized to a tibble?
https://api.monarchinitiative.org/api/search/entity/autocomplete/MELANOMA
term <- "uveal melanoma" biolink_search(term)#> $search_results #> # A tibble: 20 x 13 #> definition category label prefix equivalent_iri id score edges synonym #> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> #> 1 A melanoma … disease uvea… MONDO http://purl.o… MOND… 116.… 355 uvea m… #> 2 A melanoma … disease mixe… MONDO http://purl.o… MOND… 105.… 88 mixed … #> 3 <NA> disease post… MONDO http://purl.o… MOND… 105.… 15 medium… #> 4 A uveal mel… disease necr… MONDO http://purl.o… MOND… 105.… 46 <NA> #> 5 A uveal mel… disease epit… MONDO http://purl.o… MOND… 105.… 77 uvea e… #> 6 <NA> disease susc… MONDO http://purl.o… MOND… 105.… 105 MELANO… #> 7 Uveal melan… disease inte… MONDO http://purl.o… MOND… 97.7… 52 intrao… #> 8 A malignant… Phenotype Intr… HP _:8bb7af2439a… HP:0… 66.6… 65 Uveal … #> 9 A non-neopl… disease uvea… MONDO http://purl.o… MOND… 62.4… 141 uvea d… #> 10 greater tha… Phenotype incr… MP _:2d67f2eeaa8… MP:0… 58.4… 19 increa… #> 11 <NA> disease chor… MONDO _:7a7ac34b7b8… MOND… 58.4… 52 optic … #> 12 A uveal mel… disease iris… MONDO http://purl.o… MOND… 57.5… 102 malign… #> 13 A melanoma … disease spin… MONDO http://purl.o… MOND… 56.1… 38 Spindl… #> 14 A rare uvea… disease mali… MONDO http://purl.o… MOND… 53.4… 105 Melano… #> 15 <NA> disease cili… MONDO http://purl.o… MOND… 53.4… 52 Ciliar… #> 16 Choroid mel… disease inte… MONDO http://purl.o… MOND… 53.4… 44 mixed … #> 17 Iris melano… disease inte… MONDO http://purl.o… MOND… 53.4… 60 iris i… #> 18 <NA> disease mela… MONDO http://purl.o… MOND… 52.7… 35 MELANO… #> 19 <NA> disease mela… MONDO http://purl.o… MOND… 52.7… 36 MELANO… #> 20 Ciliary bod… disease inte… MONDO http://purl.o… MOND… 51.1… 48 ciliar… #> # ... with 4 more variables: `_version_` <chr>, equivalent_curie <chr>, #> # leaf <chr>, iri <chr> #> #> $response #> <monarch https://api.monarchinitiative.org/api/search/entity/uveal%20melanoma?rows=20&format=json> #> <Showing parsed R objects from json response. 2 level(s) deep> #> List of 4 #> $ highlighting:List of 20 #> ..$ MONDO:0003913:List of 3 #> ..$ MONDO:0004365:List of 3 #> ..$ MONDO:0003910:List of 3 #> ..$ MONDO:0003911:List of 3 #> ..$ MONDO:0004063:List of 3 #> ..$ MONDO:0004065:List of 3 #> ..$ MONDO:0003744:List of 3 #> ..$ MP:0010276 :List of 3 #> ..$ MONDO:0006200:List of 3 #> ..$ MONDO:0003927:List of 3 #> ..$ MONDO:0003912:List of 3 #> ..$ MONDO:0006486:List of 3 #> ..$ HP:0007716 :List of 3 #> ..$ MONDO:0004064:List of 3 #> ..$ MONDO:0004066:List of 3 #> ..$ MONDO:0011695:List of 3 #> ..$ MONDO:0004062:List of 3 #> ..$ MONDO:0011696:List of 3 #> ..$ MONDO:0007966:List of 3 #> ..$ MONDO:0002661:List of 3 #> $ numFound : int 704 #> $ facet_counts:List of 2 #> ..$ category :List of 3 #> ..$ taxon_label:List of 16 #> $ docs :'data.frame': 20 obs. of 37 variables: #> ..$ definition :List of 20 #> ..$ synonym_eng :List of 20 #> ..$ synonym_kw :List of 20 #> ..$ category_std :List of 20 #> ..$ id_eng : chr [1:20] "MONDO:0006486" "MONDO:0003910" "MONDO:0003927" "MONDO:0004365" ... #> ..$ equivalent_iri_std :List of 20 #> ..$ equivalent_curie_kw :List of 20 #> ..$ id_std : chr [1:20] "MONDO:0006486" "MONDO:0003910" "MONDO:0003927" "MONDO:0004365" ... #> ..$ label_std :List of 20 #> ..$ definition_std :List of 20 #> ..$ label_eng :List of 20 #> ..$ category :List of 20 #> ..$ label :List of 20 #> ..$ category_kw :List of 20 #> ..$ prefix : chr [1:20] "MONDO" "MONDO" "MONDO" "MONDO" ... #> ..$ label_kw :List of 20 #> ..$ equivalent_iri :List of 20 #> ..$ id : chr [1:20] "MONDO:0006486" "MONDO:0003910" "MONDO:0003927" "MONDO:0004365" ... #> ..$ iri_kw : chr [1:20] "http://purl.obolibrary.org/obo/MONDO_0006486" "http://purl.obolibrary.org/obo/MONDO_0003910" "http://purl.obolibrary.org/obo/MONDO_0003927" "http://purl.obolibrary.org/obo/MONDO_0004365" ... #> ..$ definition_kw :List of 20 #> ..$ iri_std : chr [1:20] "http://purl.obolibrary.org/obo/MONDO_0006486" "http://purl.obolibrary.org/obo/MONDO_0003910" "http://purl.obolibrary.org/obo/MONDO_0003927" "http://purl.obolibrary.org/obo/MONDO_0004365" ... #> ..$ category_eng :List of 20 #> ..$ equivalent_curie_eng:List of 20 #> ..$ score : num [1:20] 116 105 105 105 105 ... #> ..$ edges : int [1:20] 355 88 15 46 77 105 52 65 141 19 ... #> ..$ synonym_std :List of 20 #> ..$ definition_eng :List of 20 #> ..$ iri_eng : chr [1:20] "http://purl.obolibrary.org/obo/MONDO_0006486" "http://purl.obolibrary.org/obo/MONDO_0003910" "http://purl.obolibrary.org/obo/MONDO_0003927" "http://purl.obolibrary.org/obo/MONDO_0004365" ... #> ..$ synonym :List of 20 #> ..$ _version_ : num [1:20] 1.6e+18 1.6e+18 1.6e+18 1.6e+18 1.6e+18 ... #> ..$ equivalent_iri_kw :List of 20 #> ..$ id_kw : chr [1:20] "MONDO:0006486" "MONDO:0003910" "MONDO:0003927" "MONDO:0004365" ... #> ..$ equivalent_curie :List of 20 #> ..$ leaf : logi [1:20] FALSE FALSE TRUE FALSE FALSE TRUE ... #> ..$ equivalent_curie_std:List of 20 #> ..$ equivalent_iri_eng :List of 20 #> ..$ iri : chr [1:20] "http://purl.obolibrary.org/obo/MONDO_0006486" "http://purl.obolibrary.org/obo/MONDO_0003910" "http://purl.obolibrary.org/obo/MONDO_0003927" "http://purl.obolibrary.org/obo/MONDO_0004365" ... #>